3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCCAGCGA*UUGUGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_223 not in the Motif Atlas
Homologous match to IL_4V88_459
Geometric discrepancy: 0.1334
The information below is about IL_4V88_459
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10447.1
Basepair signature
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|S2|G|1480
7NRC|1|S2|C|1481
7NRC|1|S2|C|1482
7NRC|1|S2|A|1483
7NRC|1|S2|G|1484
7NRC|1|S2|C|1485
7NRC|1|S2|G|1486
7NRC|1|S2|A|1487
*
7NRC|1|S2|U|1519
7NRC|1|S2|U|1520
7NRC|1|S2|G|1521
7NRC|1|S2|U|1522
7NRC|1|S2|G|1523
7NRC|1|S2|A|1524
7NRC|1|S2|A|1525
7NRC|1|S2|A|1526
7NRC|1|S2|C|1527

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SA
40S ribosomal protein S3
Chain SB
40S ribosomal protein S5
Chain SF
40S ribosomal protein S16-A
Chain SI
40S ribosomal protein S19-A
Chain SJ
40S ribosomal protein S20
Chain SM
40S ribosomal protein S29-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1241 s