IL_7NRC_225

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_225 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1831

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7NRC|1|S2|C|1495
7NRC|1|S2|U|1496
7NRC|1|S2|U|1497
7NRC|1|S2|G|1498
*
7NRC|1|S2|C|1509
7NRC|1|S2|U|1510
7NRC|1|S2|U|1511
7NRC|1|S2|G|1512

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SI

40S ribosomal protein S19-A