IL_7NRC_226

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_226 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1784

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7NRC|1|S2|G|1540
7NRC|1|S2|G|1541
7NRC|1|S2|G|1542
7NRC|1|S2|A|1543
7NRC|1|S2|U|1544
7NRC|1|S2|A|1545
*
7NRC|1|S2|U|1566
7NRC|1|S2|U|1567
7NRC|1|S2|C|1568
7NRC|1|S2|A|1569
7NRC|1|S2|A|1570
7NRC|1|S2|C|1571

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SH

40S ribosomal protein S18-A

Chain SI

40S ribosomal protein S19-A

Chain SK

40S ribosomal protein S25-A