IL_7NRC_227

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7NRC|1|S2|C|1637, 7NRC|1|S2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_227 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1568

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7NRC|1|S2|C|1636
7NRC|1|S2|C|1637
7NRC|1|S2|G|1638
*
7NRC|1|S2|C|1764
7NRC|1|S2|A|1765
7NRC|1|S2|A|1766
7NRC|1|S2|G|1767

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain Se

40S ribosomal protein S26-B

Chain Sl

RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')

Chain Sn

Transfer RNA; tRNA