3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_228 not in the Motif Atlas
Homologous match to IL_8C3A_471
Geometric discrepancy: 0.1063
The information below is about IL_8C3A_471
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.2
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7NRC|1|S2|G|1638
7NRC|1|S2|C|1639
7NRC|1|S2|C|1640
7NRC|1|S2|C|1641
*
7NRC|1|S2|G|1760
7NRC|1|S2|U|1761
7NRC|1|S2|A|1762
7NRC|1|S2|A|1763
7NRC|1|S2|C|1764

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain Lp
60S ribosomal protein L41-A
Chain Sl
RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
Chain Sn
Transfer RNA; tRNA

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