IL_7NRC_232
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRC_232 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.1038
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7NRC|1|S2|C|1653
7NRC|1|S2|G|1654
7NRC|1|S2|A|1655
7NRC|1|S2|U|1656
*
7NRC|1|S2|A|1744
7NRC|1|S2|G|1745
7NRC|1|S2|A|1746
7NRC|1|S2|G|1747
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23-A
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: