IL_7NRC_233

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7NRC|1|S2|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_233 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.1575

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NRC|1|S2|U|1656
7NRC|1|S2|U|1657
7NRC|1|S2|G|1658
*
7NRC|1|S2|U|1743
7NRC|1|S2|A|1744

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23-A

Chain Lp

60S ribosomal protein L41-A

Chain Sc

40S ribosomal protein S23-A