IL_7NRC_242

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_242 not in the Motif Atlas

Homologous match to IL_5IBB_340

Geometric discrepancy: 0.4337

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7NRC|1|Sm|A|51
7NRC|1|Sm|G|52
7NRC|1|Sm|G|53
*
7NRC|1|Sm|C|62
7NRC|1|Sm|U|63

Current chains

Chain Sm

tRNA (76-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LL

60S ribosomal protein L10

Chain So

Ribosome-interacting GTPase 2