3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGU*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NRC_251 not in the Motif Atlas
Geometric match to IL_2R8S_001
Geometric discrepancy: 0.158
The information below is about IL_2R8S_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7NRC|1|S2|G|871
7NRC|1|S2|G|872
7NRC|1|S2|U|873
*
7NRC|1|S2|G|954
7NRC|1|S2|A|955
7NRC|1|S2|C|956

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SQ
40S ribosomal protein S1-A
Chain SY
40S ribosomal protein S13
Chain Sf
40S ribosomal protein S27-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1461 s