IL_7NRC_251

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_251 not in the Motif Atlas

Geometric match to IL_2R8S_001

Geometric discrepancy: 0.158

The information below is about IL_2R8S_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7NRC|1|S2|G|871
7NRC|1|S2|G|872
7NRC|1|S2|U|873
*
7NRC|1|S2|G|954
7NRC|1|S2|A|955
7NRC|1|S2|C|956

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain SQ

40S ribosomal protein S1-A

Chain SY

40S ribosomal protein S13

Chain Sf

40S ribosomal protein S27-A