IL_7NRD_003

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

7NRD|1|LA|U|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_003 not in the Motif Atlas

Homologous match to IL_5TBW_003

Geometric discrepancy: 0.1905

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7NRD|1|LA|A|13
7NRD|1|LA|U|14
7NRD|1|LA|C|15
*
7NRD|1|LC|G|144
7NRD|1|LC|U|145

Current chains

Chain LA

25S rRNA (3184-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LJ

60S ribosomal protein L8-A

Chain LP

60S ribosomal protein L15-A

Chain LZ

60S ribosomal protein L25