IL_7NRD_005
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 7NRD|1|LA|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.1388
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NRD|1|LA|C|31
7NRD|1|LA|U|32
7NRD|1|LA|G|33
7NRD|1|LA|A|34
7NRD|1|LA|A|35
7NRD|1|LA|C|36
7NRD|1|LA|U|37
7NRD|1|LA|U|38
*
7NRD|1|LA|A|45
7NRD|1|LA|U|46
7NRD|1|LA|C|47
7NRD|1|LA|A|48
7NRD|1|LA|A|49
7NRD|1|LA|U|50
7NRD|1|LA|A|51
7NRD|1|LA|A|52
7NRD|1|LA|G|53
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Lq
- 60S ribosomal protein L42-A
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