IL_7NRD_016
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_016 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.161
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRD|1|LA|G|404
7NRD|1|LA|U|405
7NRD|1|LA|G|406
7NRD|1|LA|A|407
7NRD|1|LA|A|408
7NRD|1|LA|A|409
7NRD|1|LA|U|410
*
7NRD|1|LC|A|13
7NRD|1|LC|C|14
7NRD|1|LC|G|15
7NRD|1|LC|G|16
7NRD|1|LC|A|17
7NRD|1|LC|U|18
7NRD|1|LC|C|19
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lg
- 60S ribosomal protein L32
Coloring options: