IL_7NRD_018

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

7NRD|1|LA|A|440

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|LA|C|435
7NRD|1|LA|A|436
7NRD|1|LA|G|437
7NRD|1|LA|A|438
7NRD|1|LA|C|439
7NRD|1|LA|A|440
7NRD|1|LA|U|441
7NRD|1|LA|G|442
7NRD|1|LA|G|443
7NRD|1|LA|U|444
7NRD|1|LA|G|445
7NRD|1|LA|U|446
7NRD|1|LA|U|447
7NRD|1|LA|U|448
7NRD|1|LA|U|449
7NRD|1|LA|G|450
7NRD|1|LA|U|451
7NRD|1|LA|A|486
7NRD|1|LA|U|487
7NRD|1|LA|U|488
7NRD|1|LA|U|489
7NRD|1|LA|C|490
7NRD|1|LA|A|491
7NRD|1|LA|C|492
7NRD|1|LA|U|493
7NRD|1|LA|G|494
7NRD|1|LA|G|495
*
7NRD|1|LA|C|618
7NRD|1|LA|A|619
7NRD|1|LA|U|620
7NRD|1|LA|A|621
7NRD|1|LA|A|622
7NRD|1|LA|U|623
7NRD|1|LA|G|624

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LH

60S ribosomal protein L6-B

Chain LR

60S ribosomal protein L17-A

Chain Lg

60S ribosomal protein L32

Chain Lh

60S ribosomal protein L33-A