IL_7NRD_020
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7NRD|1|LA|A|519, 7NRD|1|LA|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_020 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1732
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|G|517
7NRD|1|LA|G|518
7NRD|1|LA|A|519
7NRD|1|LA|U|520
7NRD|1|LA|A|521
7NRD|1|LA|A|522
7NRD|1|LA|A|523
7NRD|1|LA|U|524
7NRD|1|LA|C|525
*
7NRD|1|LA|G|567
7NRD|1|LA|G|568
7NRD|1|LA|A|569
7NRD|1|LA|A|570
7NRD|1|LA|U|571
7NRD|1|LA|A|572
7NRD|1|LA|C|573
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L7-A
- Chain LO
- 60S ribosomal protein L14-A
- Chain LU
- 60S ribosomal protein L20-A
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