IL_7NRD_027

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_027 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1559

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|C|758
7NRD|1|LA|U|759
7NRD|1|LA|G|760
7NRD|1|LA|A|761
7NRD|1|LA|U|762
7NRD|1|LA|G|763
*
7NRD|1|LA|C|768
7NRD|1|LA|G|769
7NRD|1|LA|G|770
7NRD|1|LA|A|771
7NRD|1|LA|U|772
7NRD|1|LA|G|773

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lc

60S ribosomal protein L28

Chain Lq

60S ribosomal protein L42-A