IL_7NRD_030

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

7NRD|1|LA|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_030 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2243

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|G|833
7NRD|1|LA|U|834
7NRD|1|LA|G|835
7NRD|1|LA|A|836
7NRD|1|LA|A|837
7NRD|1|LA|G|838
*
7NRD|1|LA|U|855
7NRD|1|LA|G|856
7NRD|1|LA|G|857
7NRD|1|LA|A|858
7NRD|1|LA|G|859
7NRD|1|LA|G|860
7NRD|1|LA|C|861

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LT

60S ribosomal protein L19-A

Chain Lr

60S ribosomal protein L43-A