IL_7NRD_043

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

7NRD|1|LA|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_043 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2377

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7NRD|1|LA|U|1014
7NRD|1|LA|U|1015
7NRD|1|LA|C|1016
7NRD|1|LA|C|1017
7NRD|1|LA|G|1018
*
7NRD|1|LA|U|1034
7NRD|1|LA|G|1035
7NRD|1|LA|A|1036

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LM

60S ribosomal protein L11-B

Chain Sn

Transfer RNA; tRNA