IL_7NRD_086

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_086 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.2715

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7NRD|1|LA|C|2204
7NRD|1|LA|U|2205
7NRD|1|LA|G|2206
*
7NRD|1|LA|C|2237
7NRD|1|LA|G|2238

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sm

Transfer RNA; tRNA