IL_7NRD_138
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_138 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.1766
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LB|G|21
7NRD|1|LB|A|22
7NRD|1|LB|A|23
7NRD|1|LB|A|24
7NRD|1|LB|G|25
7NRD|1|LB|C|26
7NRD|1|LB|A|27
*
7NRD|1|LB|U|53
7NRD|1|LB|U|54
7NRD|1|LB|A|55
7NRD|1|LB|A|56
7NRD|1|LB|G|57
7NRD|1|LB|C|58
Current chains
- Chain LB
- 5S rRNA (121-MER)
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
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