IL_7NRD_158

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7NRD|1|S2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_158 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.2211

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7NRD|1|S2|G|204
7NRD|1|S2|U|205
7NRD|1|S2|A|206
*
7NRD|1|S2|U|259
7NRD|1|S2|U|260
7NRD|1|S2|U|261
7NRD|1|S2|U|262
7NRD|1|S2|C|263

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SV

40S ribosomal protein S8-A