IL_7NRD_182

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GGCCGGUC*GGAUUUCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|S2|G|651
7NRD|1|S2|G|652
7NRD|1|S2|C|653
7NRD|1|S2|C|654
7NRD|1|S2|G|655
7NRD|1|S2|G|656
7NRD|1|S2|U|657
7NRD|1|S2|C|658
*
7NRD|1|S2|G|676
7NRD|1|S2|G|677
7NRD|1|S2|A|678
7NRD|1|S2|U|679
7NRD|1|S2|U|680
7NRD|1|S2|U|681
7NRD|1|S2|C|682
7NRD|1|S2|C|683

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SU

40S ribosomal protein S7-A