IL_7NRD_192
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 7NRD|1|S2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_192 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2333
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|S2|U|893
7NRD|1|S2|U|894
7NRD|1|S2|G|895
7NRD|1|S2|U|896
7NRD|1|S2|C|897
7NRD|1|S2|A|898
7NRD|1|S2|G|899
*
7NRD|1|S2|C|910
7NRD|1|S2|U|911
7NRD|1|S2|U|912
7NRD|1|S2|G|913
7NRD|1|S2|G|914
7NRD|1|S2|A|915
7NRD|1|S2|U|916
7NRD|1|S2|U|917
7NRD|1|S2|U|918
7NRD|1|S2|A|919
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SZ
- 40S ribosomal protein S14-B
Coloring options: