IL_7NRD_197

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7NRD|1|S2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_197 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.3767

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7NRD|1|S2|G|1051
7NRD|1|S2|U|1052
7NRD|1|S2|G|1053
*
7NRD|1|S2|C|1066
7NRD|1|S2|C|1067

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SG

40S ribosomal protein S17-B

Chain SQ

40S ribosomal protein S1-A