IL_7NRD_199

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7NRD|1|S2|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_199 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.2093

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NRD|1|S2|G|1146
7NRD|1|S2|A|1147
*
7NRD|1|S2|U|1630
7NRD|1|S2|A|1631
7NRD|1|S2|C|1632

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain Lp

60S ribosomal protein L41-B

Chain SR

40S ribosomal protein S2

Chain Se

40S ribosomal protein S26-B