IL_7NRD_202
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_202 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1979
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7NRD|1|S2|C|1173
7NRD|1|S2|C|1174
7NRD|1|S2|U|1175
*
7NRD|1|S2|G|1464
7NRD|1|S2|C|1465
7NRD|1|S2|G|1466
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SF
- 40S ribosomal protein S16-A
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SJ
- 40S ribosomal protein S20
- Chain Sm
- Transfer RNA; tRNA
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