IL_7NRD_220

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_220 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1666

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NRD|1|S2|G|1540
7NRD|1|S2|G|1541
7NRD|1|S2|G|1542
7NRD|1|S2|A|1543
7NRD|1|S2|U|1544
7NRD|1|S2|A|1545
*
7NRD|1|S2|U|1566
7NRD|1|S2|U|1567
7NRD|1|S2|C|1568
7NRD|1|S2|A|1569
7NRD|1|S2|A|1570
7NRD|1|S2|C|1571

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SH

40S ribosomal protein S18-A

Chain SI

40S ribosomal protein S19-A