IL_7NRD_238

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

7NRD|1|LA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRD_238 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1342

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|G|1898
7NRD|1|LA|G|1899
7NRD|1|LA|A|1900
7NRD|1|LA|A|1901
7NRD|1|LA|G|1902
7NRD|1|LA|U|1903
7NRD|1|LA|C|1904
7NRD|1|LA|G|1905
7NRD|1|LA|G|1906
*
7NRD|1|LA|C|2333
7NRD|1|LA|U|2334
7NRD|1|LA|G|2335
7NRD|1|LA|U|2336
7NRD|1|LA|C|2337

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A