IL_7NRD_239
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UGC*GUAAA
- Length
- 8 nucleotides
- Bulged bases
- 7NRD|1|LA|A|2242, 7NRD|1|LA|A|2243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_239 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.2243
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7NRD|1|LA|U|2200
7NRD|1|LA|G|2201
7NRD|1|LA|C|2202
*
7NRD|1|LA|G|2240
7NRD|1|LA|U|2241
7NRD|1|LA|A|2242
7NRD|1|LA|A|2243
7NRD|1|LA|A|2244
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: