IL_7NRD_241

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AAUGAAGC*GGGUU

Length

13 nucleotides

Bulged bases

7NRD|1|LA|G|2522, 7NRD|1|LA|G|2585, 7NRD|1|LA|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|LA|A|2519
7NRD|1|LA|A|2520
7NRD|1|LA|U|2521
7NRD|1|LA|G|2522
7NRD|1|LA|A|2523
7NRD|1|LA|A|2524
7NRD|1|LA|G|2525
7NRD|1|LA|C|2526
*
7NRD|1|LA|G|2584
7NRD|1|LA|G|2585
7NRD|1|LA|G|2586
7NRD|1|LA|U|2587
7NRD|1|LA|U|2588

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LD

60S ribosomal protein L2-A

Chain LJ

60S ribosomal protein L8-A

Chain LZ

60S ribosomal protein L25