IL_7NRD_245

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GCUAACCUUGAGUC*GGCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

7NRD|1|S2|U|728, 7NRD|1|S2|C|731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRD|1|S2|G|703
7NRD|1|S2|C|704
7NRD|1|S2|U|705
7NRD|1|S2|A|706
7NRD|1|S2|A|707
7NRD|1|S2|C|708
7NRD|1|S2|C|709
7NRD|1|S2|U|710
7NRD|1|S2|U|711
7NRD|1|S2|G|712
7NRD|1|S2|A|713
7NRD|1|S2|G|714
7NRD|1|S2|U|715
7NRD|1|S2|C|716
*
7NRD|1|S2|G|722
7NRD|1|S2|G|723
7NRD|1|S2|C|724
7NRD|1|S2|U|725
7NRD|1|S2|C|726
7NRD|1|S2|U|727
7NRD|1|S2|U|728
7NRD|1|S2|G|729
7NRD|1|S2|G|730
7NRD|1|S2|C|731
7NRD|1|S2|G|732
7NRD|1|S2|A|733
7NRD|1|S2|A|734
7NRD|1|S2|C|735

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SS

40S ribosomal protein S4-A