IL_7NRD_246
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UUUG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_246 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.219
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7NRD|1|S2|U|748
7NRD|1|S2|U|749
7NRD|1|S2|U|750
7NRD|1|S2|G|751
*
7NRD|1|S2|C|798
7NRD|1|S2|A|799
7NRD|1|S2|U|800
7NRD|1|S2|G|801
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sb
- 40S ribosomal protein S22-A
Coloring options: