IL_7NRD_251
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UGCA*UG
- Length
- 6 nucleotides
- Bulged bases
- 7NRD|1|S2|G|1273, 7NRD|1|S2|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NRD_251 not in the Motif Atlas
- Geometric match to IL_1FUF_002
- Geometric discrepancy: 0.2578
- The information below is about IL_1FUF_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
7NRD|1|S2|U|1272
7NRD|1|S2|G|1273
7NRD|1|S2|C|1274
7NRD|1|S2|A|1275
*
7NRD|1|S2|U|1437
7NRD|1|S2|G|1438
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain S3
- mRNA (32-MER)
- Chain SA
- 40S ribosomal protein S3
- Chain SJ
- 40S ribosomal protein S20
- Chain Sh
- Multiprotein-bridging factor 1
- Chain Sn
- Transfer RNA; tRNA
Coloring options: