IL_7NSI_021

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_021 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1937

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7NSI|1|AA|G|414
7NSI|1|AA|A|415
7NSI|1|AA|C|416
7NSI|1|AA|C|417
7NSI|1|AA|C|418
*
7NSI|1|AA|G|444
7NSI|1|AA|C|445

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

Mitochondrial ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

Ribosomal_L2_C domain-containing protein