IL_7NSI_023

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

7NSI|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_023 not in the Motif Atlas

Geometric match to IL_6UFM_002

Geometric discrepancy: 0.3887

The information below is about IL_6UFM_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7NSI|1|AA|G|491
7NSI|1|AA|U|492
7NSI|1|AA|A|493
7NSI|1|AA|C|494
7NSI|1|AA|U|495
7NSI|1|AA|A|496
7NSI|1|AA|C|497
7NSI|1|AA|U|498
7NSI|1|AA|C|499
7NSI|1|AA|G|500
*
7NSI|1|AA|C|507
7NSI|1|AA|C|508
7NSI|1|AA|U|509
7NSI|1|AA|A|510
7NSI|1|AA|A|511
7NSI|1|AA|A|512
7NSI|1|AA|A|513
7NSI|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitoribosomal protein us12m, mrps12

Chain AO

28S ribosomal protein S15, mitochondrial

Chain An

Aurora kinase A interacting protein 1