IL_7NSI_049

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_049 not in the Motif Atlas

Geometric match to IL_3SZX_001

Geometric discrepancy: 0.1626

The information below is about IL_3SZX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

7NSI|1|BA|C|181
7NSI|1|BA|C|182
7NSI|1|BA|U|183
*
7NSI|1|BA|A|192
7NSI|1|BA|U|193
7NSI|1|BA|G|194

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B5

bL32m

Chain BP

39S ribosomal protein L15, mitochondrial

Chain BU

39S ribosomal protein L20, mitochondrial isoform 1

Chain BV

39S ribosomal protein L21, mitochondrial isoform d