IL_7NSI_053

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7NSI|1|BA|G|348, 7NSI|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_053 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1658

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NSI|1|BA|G|242
7NSI|1|BA|A|243
7NSI|1|BA|A|244
7NSI|1|BA|A|245
7NSI|1|BA|C|246
*
7NSI|1|BA|G|346
7NSI|1|BA|U|347
7NSI|1|BA|G|348
7NSI|1|BA|A|349
7NSI|1|BA|U|350
7NSI|1|BA|A|351
7NSI|1|BA|G|352
7NSI|1|BA|C|353

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

39S ribosomal protein L15, mitochondrial

Chain Bn

39S ribosomal protein L51, mitochondrial