IL_7NSI_077

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

7NSI|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSI_077 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2448

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7NSI|1|BA|U|884
7NSI|1|BA|G|885
*
7NSI|1|BA|U|894
7NSI|1|BA|U|895
7NSI|1|BA|A|896
7NSI|1|BA|A|897

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

Ribosomal_L2_C domain-containing protein