IL_7NSO_016

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NSO|1|A|G|801, 7NSO|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSO_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0726

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NSO|1|A|G|674
7NSO|1|A|A|675
7NSO|1|A|A|676
7NSO|1|A|A|677
7NSO|1|A|C|678
*
7NSO|1|A|G|799
7NSO|1|A|A|800
7NSO|1|A|G|801
7NSO|1|A|A|802
7NSO|1|A|U|803
7NSO|1|A|A|804
7NSO|1|A|G|805
7NSO|1|A|C|806

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15