IL_7NSO_174

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSO_174 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1045

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NSO|1|a|G|1401
7NSO|1|a|C|1402
7NSO|1|a|C|1403
7NSO|1|a|C|1404
*
7NSO|1|a|G|1497
7NSO|1|a|U|1498
7NSO|1|a|A|1499
7NSO|1|a|A|1500
7NSO|1|a|C|1501

Current chains

Chain a

16S rRNA (1540-MER)

Nearby chains

Chain 6

mRNA

Chain 8

Transfer RNA; tRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA