IL_7NSP_030

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSP_030 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3956

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NSP|1|A|G|875
7NSP|1|A|C|876
7NSP|1|A|A|877
7NSP|1|A|A|878
7NSP|1|A|G|879
7NSP|1|A|G|880
*
7NSP|1|A|C|897
7NSP|1|A|C|898
7NSP|1|A|A|899
7NSP|1|A|A|900
7NSP|1|A|C|901
7NSP|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain v

Transfer RNA; tRNA