IL_7NSP_086

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGG*CUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSP_086 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3653

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7NSP|1|A|G|2138
7NSP|1|A|U|2139
7NSP|1|A|G|2140
7NSP|1|A|G|2141
*
7NSP|1|A|C|2150
7NSP|1|A|U|2151
7NSP|1|A|G|2152
7NSP|1|A|C|2153

Current chains

Chain A

23S rRNA

Nearby chains