IL_7NSP_189

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSP_189 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1329

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NSP|1|A|U|1851
7NSP|1|A|U|1852
7NSP|1|A|A|1853
7NSP|1|A|A|1854
7NSP|1|A|U|1855
7NSP|1|A|U|1856
7NSP|1|A|G|1857
7NSP|1|A|A|1858
7NSP|1|A|U|1859
7NSP|1|A|G|1860
*
7NSP|1|A|U|1882
7NSP|1|A|U|1883
7NSP|1|A|G|1884
7NSP|1|A|A|1885
7NSP|1|A|U|1886
7NSP|1|A|C|1887
7NSP|1|A|G|1888
7NSP|1|A|A|1889
7NSP|1|A|A|1890
7NSP|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains