IL_7NSQ_016

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7NSQ|1|A|G|801, 7NSQ|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSQ_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0907

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7NSQ|1|A|G|674
7NSQ|1|A|A|675
7NSQ|1|A|A|676
7NSQ|1|A|A|677
7NSQ|1|A|C|678
*
7NSQ|1|A|G|799
7NSQ|1|A|A|800
7NSQ|1|A|G|801
7NSQ|1|A|A|802
7NSQ|1|A|U|803
7NSQ|1|A|A|804
7NSQ|1|A|G|805
7NSQ|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15