IL_7NSQ_099

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSQ_099 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.099

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7NSQ|1|A|C|2652
7NSQ|1|A|U|2653
7NSQ|1|A|A|2654
7NSQ|1|A|G|2655
7NSQ|1|A|U|2656
7NSQ|1|A|A|2657
7NSQ|1|A|C|2658
*
7NSQ|1|A|G|2663
7NSQ|1|A|G|2664
7NSQ|1|A|A|2665
7NSQ|1|A|C|2666
7NSQ|1|A|C|2667
7NSQ|1|A|G|2668

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6