IL_7NWG_009
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCCC*GCGGG
- Length
- 9 nucleotides
- Bulged bases
- 7NWG|1|51|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_009 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2728
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
7NWG|1|51|C|123
7NWG|1|51|C|124
7NWG|1|51|C|125
7NWG|1|51|C|126
*
7NWG|1|51|G|142
7NWG|1|51|C|143
7NWG|1|51|G|144
7NWG|1|51|G|145
7NWG|1|51|G|146
Current chains
- Chain 51
- 28S Ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G3
- L7a
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
Coloring options: