IL_7NWG_020
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 7NWG|1|51|G|409, 7NWG|1|51|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_020 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.2049
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7NWG|1|51|G|387
7NWG|1|51|A|388
7NWG|1|51|A|389
7NWG|1|51|C|390
*
7NWG|1|51|G|401
7NWG|1|51|A|402
7NWG|1|51|G|403
7NWG|1|51|U|404
7NWG|1|51|U|405
7NWG|1|51|C|406
7NWG|1|51|A|407
7NWG|1|51|A|408
7NWG|1|51|G|409
7NWG|1|51|A|410
7NWG|1|51|G|411
7NWG|1|51|G|412
7NWG|1|51|G|413
7NWG|1|51|C|414
Current chains
- Chain 51
- 28S Ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P3
- uL22
- Chain Y3
- Ribosomal protein L26
- Chain l3
- eL39
Coloring options: