IL_7NWG_025

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGGUC*GCC

Length

9 nucleotides

Bulged bases

7NWG|1|51|C|481|||A, 7NWG|1|51|G|483, 7NWG|1|51|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_025 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2674

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NWG|1|51|G|481
7NWG|1|51|C|481|||A
7NWG|1|51|G|482
7NWG|1|51|G|483
7NWG|1|51|U|484
7NWG|1|51|C|485
*
7NWG|1|51|G|671
7NWG|1|51|C|672
7NWG|1|51|C|673

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain r3

eL28