IL_7NWG_029

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

7NWG|1|51|C|498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_029 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2404

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7NWG|1|51|G|497
7NWG|1|51|C|498
7NWG|1|51|G|499
*
7NWG|1|51|C|656
7NWG|1|51|C|657
7NWG|1|51|C|658

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4