IL_7NWG_032

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7NWG|1|51|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_032 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.3493

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7NWG|1|51|C|709
7NWG|1|51|G|710
*
7NWG|1|51|C|1286
7NWG|1|51|G|1287
7NWG|1|51|G|1288

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain f3

eL33