IL_7NWG_034

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

7NWG|1|51|G|729, 7NWG|1|51|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_034 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.1692

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7NWG|1|51|C|727
7NWG|1|51|U|728
7NWG|1|51|G|729
7NWG|1|51|G|730
7NWG|1|51|G|731
*
7NWG|1|51|C|938
7NWG|1|51|G|939

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain F3

uL30

Chain M3

Ribosomal protein L14

Chain S3

60S ribosomal protein L18a